1. Research
  2. Molecular Modelling and Bioinformatics
  3. Molecular Modelling and Bioinformatics publications

Molecular Modelling and Bioinformatics publications

Computational Prediction of HIV-1 Resistance to Protease Inhibitors
Hosseini A, Alibés A, Noguera-Julian M, Gil V, Paredes R, Soliva R, Orozco M and Guallar V.
J Chem Inf Model, 56 (5), 915-23 (2016)
Long-timescale dynamics of the Drew-Dickerson dodecamer
Dans PD, Danilāne L, Ivani I, Dršata T, Lankaš F, Hospital A, Walther J, Pujagut RI, Battistini F, Gelpí JL, Lavery R and Orozco M.
Nucleic Acids Res, 44 (9), 4052-66 (2016)
Editorial overview: Theory and simulation
Orozco M and Srinivasan N.
Curr Opin Struc Biol (2016)
Rational design of novel N-alkyl-N capped biostable RNA nanostructures for efficient long-term inhibition of gene expression
Terrazas M, Ivani I, Villegas N, Paris C, Salvans C, Brun-Heath I and Orozco M.
Nucleic Acids Res, 44 (9), 4354-67 (2016)
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data
Hospital A, Andrio P, Cugnasco C, Codo L, Becerra Y, Dans PD, Battistini F, Torres J, Goñi R, Orozco M and Gelpí JL.
Nucleic Acids Res, 44 (D1), D272-8 (2016)
Exploring the complete mutational space of the LDL receptor LA5 domain using molecular dynamics: linking SNPs with disease phenotypes in familial hypercholesterolemia
Angarica VE, Orozco M and Sancho J.
Hum Mol Genet, 25 (6), 1233-46 (2016)
Nucleosome architecture throughout the cell cycle
Deniz Ö, Flores O, Aldea M, Soler-López M and Orozco M.
Sci Rep, 6 19729 (2016)
Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Heyn H, Vidal E, Ferreira HJ, Vizoso M, Sayols S, Gomez A, Moran S, Boque-Sastre R, Guil S, Martinez-Cardus A, Lin CY, Royo R, Sanchez-Mut JV, Martinez R, Gut M, Torrents D, Orozco M, Gut I, Young RA and Esteller M.
Genome Biol, 17 (1), 11 (2016)
Residues Coevolution Guides the Systematic Identification of Alternative Functional Conformations in Proteins
Sfriso P, Duran-Frigola M, Mosca R, Emperador A, Aloy P and Orozco M.
Structure, 24 (1), 116-26 (2016)
Multiscale simulation of DNA
Dans PD, Walther J, Gómez H and Orozco M.
Curr Opin Struc Biol, 37 29-45 (2016)

* shared senior authorship