1. Research
  2. Genome Data Science
  3. Genome Data Science publications

Genome Data Science publications

The landscape of microbial phenotypic traits and associated genes
M Brbić, M Piškorec, V Vidulin, A Kriško, T Šmuc, F Supek
Nucl Acids Res (2016)
The rules and impact of nonsense-mediated mRNA decay in human cancers
RGH Lindeboom, F Supek*, B Lehner*
Nature Genetics (2016)
Global shifts in genome and proteome composition are very tightly coupled
M Brbić, T Warnecke, A Kriško, F Supek
Genome biology and evolution, 6 (7), 1532-1519 (2015)
Differential DNA mismatch repair underlies mutation rate variation across the human genome
F Supek, B Lehner
Nature (2015)
Hydroxymethylated cytosines are associated with elevated C to G transversion rates
F Supek, B Lehner, P Hajkova, T Warnecke
PLoS Genet , 9 (10), -e1004585 (2014)
Signatures of conformational stability and oxidation resistance in proteomes of pathogenic bacteria
A Vidovic, F Supek, A Nikolic, A Krisko
Cell reports, 5 (7), 1400-1393 (2014)
Inferring gene function from evolutionary change in signatures of translation efficiency
A Krisko, T Copic, T Gabaldón, B Lehner, F Supek
Genome Biology (2014)
Synonymous mutations frequently act as driver mutations in human cancers
F Supek, B Miñana, J Valcárcel, T Gabaldón, B Lehner
Cell (2014)
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS Comput Biol, 1 (9), -e1002852 (2013)
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one, 7 (6), -e21800 (2011)

* shared senior authorship