Chromatin structure and function
Ferran Azorín
Principal Investigator
Professor (IBMB-CSIC)
Office Tel : +34 93 403 49 58
Lab Tel : +34 93 403 49 60
e-mail : ferran.azorin
irbbarcelona.org
Background
Genomic functions take place in chromatin, not in naked DNA. In recent years, our knowledge about the regulation of chromatin functions has improved thanks to the identification of components and mechanisms that modify its structural and functional properties, such as remodelling complexes, histone modifications (acetylation, methylation...)and the corresponding enzymes, histone variants that localise to specific chromosome locations, structural non-histone proteins that contribute to the structural properties of specific chromatin regions (heterochromatin), among others. Our research focuses on the study of the molecular basis of chromatin function and its regulation.
Research Interests
- Epigenetic regulation of genomic functions
- Centromere structure and function: chromosome segregation
- Study of the structural and functional properties of heterochromatin
- Study of the epigenetic mechanisms involved in the regulation of homeotic gene expression in Drosophila
Research Lines
I. Centromere structure and function: chromosome segregation.
We seek to determine the structural and functional properties of centromeric and telomeric chromatin and its contribution to chromosome segregation.
Our specific objectives are:
- To perform structural and functional analysis of the centric histone H3 variants and their role in kinetochore assembly.
- To analyse the contribution of the RNAi pathway to the establishment and maintenance of heterochromatin.
- To study the molecular determinants of the interaction of HP1 proteins with chromatin.
- To analyse the contribution of multi-KH domain proteins to the structural and functional properties of centric heterochromatin and its and determine its participation in chromosome condensation and segregation.
II. Epigenetic regulation of chromatin structure and function.
Here we address the contribution of histone modifications to the regulation of chromatin structure and function.
Our specific objectives are:
- To determine the pattern of post-translation modification of histone H1 and to analyse its contribution to the structural and functional properties of chromatin.
- To perform the functional characterisation of histone methyl-transferases.
- To perform the structural and functional characterisation of chromatin factors that specifically recognise methylated histones.
III.- Epigenetic regulation of homeotic gene expression in Drosophila.
Chromatin structure plays a crucial role in the regulation of gene expression. In this context, our efforts focus on determining the contribution of chromatin structure to the establishment and maintenance of the pattern of expression of homeotic genes in Drosophila.
Our specific objectives are:
- To analyse the contribution of chromatin structure to the functional regulation of the bithorax complex.
- To analyse the contribution of the dSAP18 protein to the regulation of Fab-7 functions.
Funding
This group receives funding from the following:
- Programa Nacional de Promoción General del Conocimiento (National Programme for the Promotion of Knowledge)
- European Commission FP6
More info
Chromatin structure and function
2008
The fission yeast homologue of CENP-B, Abp1, regulates directionality of mating-type switching
Aguilar-Arnal L, Marsellach FX and Azorín F
EMBO J 27, pag. 1029-1038 (2008)
Characterisation of Drosophila melanogaster JmjC+N histone demethylases
Lloret-Llinares M, Carré C, Vaquero A, de Olano N and Azorín F
Nucleic Acids Res 36, pag. 2852-2863 (2008)
2007
Intracellular targeting of telomeric retrotransposon Gag proteins of distantly related Drosophila species
Casacuberta E., Azorín F., and Pardue M. L.
Proc. Natl. Acad. Sci. USA 104, pag. 8391-8396 (2007)
RNA is an integral component of chromatin that contributes to its structural organisation
A. Rodríguez-Campos and F. Azorín
PLoS ONE 11, pag. e1182, Vol: 2 (2007)
General, negative feedback mechanism for regulation of Trithorax-like gene expression in vivo: new roles for GAGA factor in flies
Bernués, J., Piñeyro, D., and Kosoy, A.
Nucleic Acids Res 35, pag. 7150-7159 (2007)
SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation
Vaquero, A., Scher, M., Erdjument-Bromage, H., Tempst, P., Serrano, L., and Reinberg, D
Nature 450, pag. 440-444 (2007)
2006
Proteolysis restricts localisation of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres
O. Moreno-Moreno, M. Torras-Lort and F. Azorín
Nucleic Acid Res., Vol: on line publication, 7 Nov (2006)
SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis
Vaquero A., Scher M., Lee DH., Sutton A., Cheng HL., Alt F., Serrano L., Sternglaz R., and Reinberg D.
Genes Dev 20, pag. 1256-1261 (2006)
Drosophila dSAP18 is a nuclear protein that associates with chromosomes and the nuclear matrix, and interacts with pinin, a protein factor involved in RNA
E.Costa, S. Canudas, I. Garcia-Bassets, S. Pérez, I. Fernández, E. Giralt, F. Azorín and M.Ll. Espinás.
Chromosome Res. 14, pag. 515-526 (2006)
The multi-KH-domain protein of Saccharomyces cerevisiae contributes to the regulation of telomeric silencing
F.-X. Marsellach, D. Huertas and F. Azorín
J. Biol Chem. 281, pag. 18227-18235 (2006)
RNA interference has a role in regulating Drosophila telomeres
E. Casacuberta, M.L. Pardue
Genome Biol. 7, pag. 220 (2006)
2005
The GAGA protein of Drosophila is phosphorylated by CK2
C. Bonet, I. Fernández, X. Aran, J. Bernués, E. Giralt and F. Azorín
J. Mol Biol. 351, pag. 562-572 (2005)
dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element
S. Canudas, L. Fanti, S. Pimpinelli, N. Singh, S. Hanes, F. Azorín and M. L. Espinás
Nucleic Acids Res 33, pag. 4857-4864 (2005)
2004
Drosophila DDP1, a multi KH-domain protein, contributes to centromeric silencing and chromosome segregation
D. Huertas, A. Cortés, J. Casanova and F. Azorín
Curr. Biol, 14, 1611-1620 (2004) 14, pag. 1611-1620 (2004)
Repression by TTK69 of GAGA-mediated activation occurs in the absence of TTK69 binding to DNA and solely requires the contribution of the POZ/BTB domain of TTK69
S. Pagans, D. Piñeyro, A. Kosoy, J. Bernués and, F. Azorín
J. Biol. Chem 279, pag. 9725-9732 (2004)
2003
Analising the contribution of nucleic acids to the structure and properties of centric heterochromatin
A. Cortés, D. Huertas, F.X. Marsellach, N. Ferrer-Miralles, M. Ortiz-Lombardía, L. Fanti, S. Pimpinelli, B. Piña and F. Azorín
Genetica 117, pag. 117-125 (2003)
Functional characterization of the human phosphodiesterase 7A1 promoter
M. Torras-Llort, and F. Azorín
Biochem J 373, pag. 835-843 (2003)
Chromatin structure and function
Ferran Azorín
Principal Investigator
Professor (IBMB-CSIC)
Office Tel : +34 93 403 49 58
Lab Tel : +34 93 403 49 60
e-mail : ferran.azorin
irbbarcelona.org
Senior Associate researcher
Jordi Bernués
tel +34 93 403 49 60
jordi.bernues
irbbarcelona.org
Maria Lluïsa Espinás
tel +34 93 403 49 62
maria.espinas
irbbarcelona.org
Associate researcher
Elena Casacuberta
tel +34 93 403 49 62
elena.casacuberta
irbbarcelona.org
Alejandro Vaquero
tel +34 93 403 49 63
alejandro.vaquero
irbbarcelona.org
Postdoctoral fellow
Francesc-Xavier Marsellach
tel +34 93 403 49 63
francesc.marsellach
irbbarcelona.org
Olga Moreno
tel +34 93 403 49 63
olga.moreno
irbbarcelona.org
Mónica Torras
tel +34 93 403 49 63
monica.torras
irbbarcelona.org
Clèment Carrè
Martí Badal Soler
tel +34 93 403 49 63
marti.badal
irbbarcelona.org
PhD Students
Lorena Aguilar
tel +34 93 403 49 63
lorena.aguilar
irbbarcelona.org
Marta Batlle
tel +34 93 403 49 63
marta.batlle
irbbarcelona.org
Sonia Medina
tel +34 93 403 49 63
sonia.medina
irbbarcelona.org
Marta Lloret Llinares
tel +34 93 403 49 63
marta.lloret
irbbarcelona.org
Joan Font
tel +34 93 403 49 63
joan.font
irbbarcelona.org
Rute Sousa
tel +34 93 403 49 63
rute.sousa
irbbarcelona.org
Olivera Vujatovic
tel +34 93 403 49 63
olivera.vujatovic
irbbarcelona.org
Sergi Cuartero
tel +34 93 403 49 63
sergio.cuartero
irbbarcelona.org
David Piñeyro
tel +34 93 403 49 63
david.pineyro
irbbarcelona.org
Marta Blanch
tel +34 93 403 49 63
marta.blach
irbbarcelona.org
Elisabet Costa
tel +34 93 403 49 63
elisabet.costa
irbbarcelona.org
Xavier Aran
tel +34 93 403 49 63
xavier.aran
irbbarcelona.org
Research assistant
Esther Fuentes
tel +34 93 403 49 64
esther.fuentes
irbbarcelona.org
Carles Bonet
carles.bonet
irbbarcelona.org
Gemma Mollà
tel +34 93 403 49 63
gemma.valles
irbbarcelona.org
Alicia Vera Cabanillas
tel +34 93 403 49 63
alicia.vera
irbbarcelona.org
Visiting student
Tomasso Cabaza
Pablo Sirkin