Chromatin structure and function
Ferran Azorín
Group Leader
Professor (IBMB-CSIC)
Office Tel : +34 93 40 34958
Lab Tel : +34 93 403 49 64
e-mail : ferran.azorin
irbbarcelona.org
Background
Genomic functions take place in chromatin, not in naked DNA. In recent years, our knowledge about the regulation of chromatin functions has improved thanks to the identification of components and mechanisms that modify its structural and functional properties, such as remodelling complexes, histone modifications (acetylation, methylation...)and the corresponding enzymes, histone variants that localise to specific chromosome locations, structural non-histone proteins that contribute to the structural properties of specific chromatin regions (heterochromatin), among others. Our research focuses on the study of the molecular basis of chromatin function and its regulation.
Research Interests
- Epigenetic regulation of genomic functions
- Centromere structure and function: chromosome segregation
- Study of the structural and functional properties of heterochromatin
- Study of the epigenetic mechanisms involved in the regulation of homeotic gene expression in Drosophila
Research Lines
I. Centromere structure and function: chromosome segregation.
We seek to determine the structural and functional properties of centromeric and telomeric chromatin and its contribution to chromosome segregation.
Our specific objectives are:
- To perform structural and functional analysis of the centric histone H3 variants and their role in kinetochore assembly.
- To analyse the contribution of the RNAi pathway to the establishment and maintenance of heterochromatin.
- To study the molecular determinants of the interaction of HP1 proteins with chromatin.
- To analyse the contribution of multi-KH domain proteins to the structural and functional properties of centric heterochromatin and its and determine its participation in chromosome condensation and segregation.
II. Epigenetic regulation of chromatin structure and function.
Here we address the contribution of histone modifications to the regulation of chromatin structure and function.
Our specific objectives are:
- To determine the pattern of post-translation modification of histone H1 and to analyse its contribution to the structural and functional properties of chromatin.
- To perform the functional characterisation of histone methyl-transferases.
- To perform the structural and functional characterisation of chromatin factors that specifically recognise methylated histones.
III.- Epigenetic regulation of homeotic gene expression in Drosophila.
Chromatin structure plays a crucial role in the regulation of gene expression. In this context, our efforts focus on determining the contribution of chromatin structure to the establishment and maintenance of the pattern of expression of homeotic genes in Drosophila.
Our specific objectives are:
- To analyse the contribution of chromatin structure to the functional regulation of the bithorax complex.
- To analyse the contribution of the dSAP18 protein to the regulation of Fab-7 functions.
Funding
This group receives funding from the following:
- Programa Nacional de Promoción General del Conocimiento (National Programme for the Promotion of Knowledge)
- European Commission FP6
More info
Chromatin structure and function
A conserved arginine-rich motif within the hypervariable N-domain of Drosophila centromeric histone H3 (CenH3CID) mediates BubR1 recruitment
Torras-Llort M, Medina-Giró S, Moreno-Moreno O and Azorín F.
PLoS One, 5 (10)-e13747 (2010)
Drosophila vigilin, DDP1, localises to the cytoplasm and associates to the rough-endoplasmic reticulum
Batlle M, Marsellach FX, Huertas D and Azorín F
Biochim Biophys Acta. (In press) (2010)
Acetylation of GAGA factor modulates its interaction with DNA
Aran-Guiu X, Ortiz-Lombardía M, Oliveira E, Bonet Costa C, Odena MA, Bellido D, Bernués J.
Biochemistry, 49 (43), 9140-9150 (2010)
A new aminoacyl-tRNA synthetase-like protein in insecta with an essential mitochondrial function
Guitart T, Leon Bernardo T, Segalés J, Stratmann T, Bernués J and Ribas de Pouplana L.
J Biol Chem. (In press) (2010)
Focus on the centre: the role of chromatin on the regulation of centromere identity and function
Torras-Llort M, Moreno-Moreno O and Azorín F
EMBO J, 28 (16), 2337-2348 (2009)
Drosophila HP1c isoform interacts with the zinc-finger proteins WOC and relative-of-WOC (ROW) to regulate gene expression
Font-Burgada J, Rossell D, Auer H and Azorín F
Genes Dev, 22 (21), 3007-3023 (2008)
Characterization of Drosophila melanogaster JmjC+N histone demethylases
Lloret-Llinares M, Carré C, Vaquero A, de Olano N and Azorín F
Nucleic Acids Res, 36 (9), 2852-2863 (2008)
The fission yeast homologue of CENP-B, Abp1, regulates directionality of mating-type switching
Aguilar-Arnal L, Marsellach FX and Azorín F
EMBO J, 27 (7), 1029-1038 (2008)
Characterization of new regulatory elements within the Drosophila bithorax complex
Pérez-Lluch S, Cuartero S, Azorín F and Espinàs ML
Nucleic Acids Res, 36 (21), 6926-6933 (2008)
Activation properties of GAGA transcription factor
Vaquero A, Blanch M, Espinás ML and Bernués J
Biochim Biophys Acta, 1779 (5), 312-317 (2008)
Intracellular targeting of telomeric retrotransposon Gag proteins of distantly related Drosophila species
Casacuberta E, Azorín F and Pardue ML
Proc Natl Acad Sci USA, 104 (20), 8391-8396 (2007)
RNA is an integral component of chromatin that contributes to its structural organization
Rodríguez-Campos A and Azorín F
PLoS ONE, 2 (11), e1182 (2007)
General, negative feedback mechanism for regulation of Trithorax-like gene expression in vivo: new roles for GAGA factor in flies
Bernués J, Piñeyro D and Kosoy A
Nucleic Acids Res, 35 (21), 7150-7159 (2007)
Drosophila dSAP18 is a nuclear protein that associates with chromosomes and the nuclear matrix, and interacts with pinin, a protein factor involved in RNA splicing
Costa E, Canudas S, Garcia-Bassets I, Pérez S, Fernández I, Giralt E, Azorín F and Espinás ML
Chromosome Res, 14 (5), 515-526 (2006)
Proteolysis restricts localisation of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres
Moreno-Moreno O, Torras-Lort M and Azorín F
Nucleic Acid Res, 34 (21), 6247-6255 (2006)
The multi-KH-domain protein of Saccharomyces cerevisiae contributes to the regulation of telomeric silencing
Marsellach FX, Huertas D and Azorín F
J Biol Chem, 281 (26), 18227-18235 (2006)
The GAGA protein of Drosophila is phosphorylated by CK2
Bonet C, Fernández I, Aran X, Bernués J, Giralt E and Azorín F
J Mol Biol, 351 (3), 562-572 (2005)
dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element
Canudas S, Fanti L, Pimpinelli S, Singh N, Hanes S, Azorín F and Espinás ML
Nucleic Acids Res, 33 (15), 4857-4864 (2005)
Drosophila DDP1, a multi KH-domain protein, contributes to centromeric silencing and chromosome segregation
Huertas D, Cortés A, Casanova J and Azorín F
Curr Biol, 14 (18), 1611-1620 (2004)
Repression by TTK69 of GAGA-mediated activation occurs in the absence of TTK69 binding to DNA and solely requires the contribution of the POZ/BTB domain of TTK69
Pagans S, Piñeyro D, Kosoy A, Bernués J and Azorín F
J Biol Chem, 279 (11), 9725-9732 (2004)
Analysing the contribution of nucleic acids to the structure and properties of centric heterochromatin
Cortés A, Huertas D, Marsellach FX, Ferrer-Miralles N, Ortiz-Lombardía M, Fanti L, Pimpinelli S, Piña B and Azorín F
Genetica, 117 (2-3), 117-125 (2003)
Functional characterization of the human phosphodiesterase 7A1 promoter
Torras-Llort M and Azorín F
Biochem J, 373 (Pt 3), 835-843 (2003)
Chromatin structure and function
© Photos by Gianluca Battista/Massimiliano Minocri
Ferran Azorín
Group Leader
Professor (IBMB-CSIC)
Office Tel : +34 93 40 34958
Lab Tel : +34 93 403 49 64
e-mail : ferran.azorin
irbbarcelona.org
Research Associates
Jordi Bernués
tel +34 93 40 34960
e-mail: jordi.bernues
irbbarcelona.org
María Lluisa Espinas
tel +34 93 40 34962
e-mail: maria.espinas
irbbarcelona.org
Postdoctoral Fellows
Anne Daulny
tel +34 93 40 34963
e-mail: anne.daulny
irbbarcelona.org
Eva Maria Mejía
tel +34 93 40 34963
e-mail: eva.mejia
irbbarcelona.org
Mònica Torras
tel +34 93 40 34960
e-mail: monica.torras
irbbarcelona.org
Olga Moreno
tel +34 93 40 34960
e-mail: olga.moreno
irbbarcelona.org
Tomas Ernesto Morán
tel +34 93 40 34963
e-mail: tomas.moran
irbbarcelona.org
PhD Students
Marta Lloret
tel +34 93 40 34963
e-mail: marta.lloret
irbbarcelona.org
Olivera Vujatovic
tel +34 93 40 34964
e-mail: olivera.vujatovic
irbbarcelona.org
Roman Kessler
tel +34 93 40 34963
e-mail: roman.kessler
irbbarcelona.org
Salvador Pérez
tel +34 93 40 34963
e-mail: salvador.perez
irbbarcelona.org
Sergi Cuartero
tel +34 93 40 34962
e-mail: sergi.cuartero
irbbarcelona.org
Sònia Medina
tel +34 93 40 34963
e-mail: sonia.medina
irbbarcelona.org
Research Assistants
Alicia Vera
tel +34 93 40 34960
e-mail: alicia.vera
irbbarcelona.org
Carles Bonet
tel +34 93 40 34963
e-mail: carles.bonet
irbbarcelona.org
Gemma Molla
tel +34 93 40 34962
e-mail: gemma.molla
irbbarcelona.org
Lab Technicians
Estefania Freire
tel +34 93 40 34963
e-mail: estefania.freire
irbbarcelona.org
Chromatin structure and function