Combinatorial chemistry for the discovery of new compounds
Fernando Albericio
Principal Investigator
Professor (Organic Chemistry Dept. - UB)
Office Tel : +34 93 403 70 88
Lab Tel : +34 93 4037087-+34 93 4037069
e-mail : fernando.albericio
irbbarcelona.org
Background
This group applies sciences to obtain two types of new compounds: pharmacological agents (medicinal chemistry) and polymers (new materials field). Our research involves two complementary elements: the exploration of new methodologies for the preparation of libraries, and the application of these methodologies in the search for new compounds. In terms of methodology, we work on supports, handles, scaffolds and privileged structures that interact with two or more unrelated receptors. In the field of medicinal chemistry, our studies focus mainly on two types of processes: cancer and disorders of the central nervous system.
Research Lines
a) Synthesis and structural assignation of peptides with bioactivity
Marine Peptides. In this sub-project, we focus on structurally different compounds: kahalalide F (currently in Phase III clinical trials), cyclopeptides, and peptides with concatenated azols. Our main interests are: the analogingof natural compounds to increase the potency of natural compounds such as kahalalide F; the preparation of analog libraries to improve ADME properties; and the development of synthetic methodologies for these compounds.
Peptidic Cancer Vaccines: This project addresses the rational development of synthetic, peptide-based vaccines for the treatment of melanoma. To eliminate tumours and prevent their proliferation to other organs (metastasis), a cancer vaccine must have the capacity to selectively induce both cellular (cytotoxic T cells) and humoral (specific B lymphocytes) immune responses. The structural flexibility of the peptidic vaccines proposed would facilitate the development of cancer-specific and patient-specific therapeutic strategies. Furthermore, multiple antigens could be used on the same vaccine to increase its coverage and prevent the emergence of resistant variants.
b) Synthesis of polyheterocyclic nitrogen-containing systems
Marine invertebrates, such as sponges, tunicates, ascidians and corals, have provided a rich arsenal of new bioactive compounds. These compounds are characterized by unprecedented structures and are highly active against various tumour cell lines. We have synthesized several marine alkaloids (listed below) in solution or in solid-phase, and we are currently preparing libraries of related compounds and also developing total syntheses of new marine alkaloids. E.g.: Ascididemine, Variolin-B, Pyrrole Lamellarin derivatives, Pentacyclic Lamellarins
c) Solid-phase synthesis of bioactive libraries compounds
We use combinatorial chemistry to prepare medium-sized libraries, with a focus on improving the activity, physical properties or other characteristics of bioactive compounds.
d) New resins and linkers Solid-phase synthesis requires properly functionalized resins and linkers.
The resins can be used not only as supporting material for anchoring the scaffold and growing the compound but also as protecting group of a functionality of the reactive starting material. Our research in this field includes the modification of commercially available resins and the synthesis of new linkers.
e) The hexafluoroacetone chemistry (HFA)
The bi-functional application of HFA as protecting group and activating agent for a-hydroxyacids is useful for the preparation of depsipeptides and other compounds of biological interest. We are currently preparing depsipeptidic analogs of Cilengitide (Merck) and also libraries of peptides and glycosidic compounds.
Funding
This group receives financial support from the following sources:
- Comisión Interministerial de Ciencia y Tecnología (Interministerial Commission for Science and Technology)
- Fundació La Marató de TV3 ("La Marató de TV3" Foundation)
- Secretaría de Estado de Cooperación Internacional (AECI)(Spanish Agency for International Cooperation)
More info
Combinatorial chemistry for the discovery of new compounds
Synthesis of oligonucleotide derivatives using ChemMatrix supports
Mazzini S, García-Martin F, Alvira M, Aviñó A, Manning B, Albericio F and Eritja R
Chem Biodivers, 5 (1), 209-218 (2008)
Solid-phase synthesis of oligomers carrying several chromophore units linked by phosphodiester backbones
Aviñó A, Navarro I, Farrera-Sinfreu J, Royo M, Aymamí J, Delgado A, Llebaria A, Albericio F and Eritja R
Bioorg Med Chem Lett, 18 (7), 2306-2310 (2008)
Design, synthesis and antiproliferative properties of oligomers with chromophore units linked by amide backbones
Farrera-Sinfreu J, Aviñó A, Navarro I, Aymamí J, Beteta NG, Varón S, Pérez-Tomás R, Castillo-Avila W, Eritja R, Albericio F and Royo M
Bioorg Med Chem Lett, 18 (7), 2440-2444 (2008)
Understanding the mechanism of action of the novel SSAO substrate (C7NH10)6(V10O28).2H2O, a prodrug of peroxovanadate insulin mimetics
Yraola F, García-Vicente S, Marti L, Albericio F, Zorzano A and Royo M
Chem Biol Drug Des, 69 (6), 423-428 (2007)
Oral insulin-mimetic compounds that act independently of insulin
Garcia-Vicente S, Yraola F, Marti L, González-Muñoz E, García-Barrado MJ, Canto C, Abella A, Bour S, Artuch R, Sierra C, Brandi N, Carpene C, Moratinos J, Camps M, Palacín M, Testar X, Guma A, Albericio F, Royo M, Mian A and Zorzano A
Diabetes, 56 (2), 486 (2007)
New developments on the synthesis of oligonucleotide-peptide conjugates
Portela C, Mascareñas JL, Albericio F, Mazzini S, Caminal C, Ramos R, Ocampo SM and Eritja R
Nucleosides Nucleotides Nucleic Acids, 26 (8-9), 963-967 (2007)
Solid-phase synthesis of oxathiocoraline by a key intermolecular disulfide dimer
Tulla-Puche J, Bayó-Puxan N, Moreno JA, Francesch AM, Cuevas C, Álvarez M and Albericio F
J Am Chem Soc, 129 (17), 5322-5323 (2007)
Smallest peptoids with antiproliferative activity on human neoplastic cells
Mas-Moruno C, Cruz LJ, Mora P, Messeguer A, Pérez-Payá E and Albericio F
J Med Chem, 50 (10), 2443-2449 (2007)
Novel ergopeptides as dual ligands for adenosine and dopamine receptors
Vendrell M, Angulo E, Casado V, Lluis C, Franco R, Albericio F and RoyoM
J Med Chem, 50 (13), 3062-3069 (2007)
Design and synthesis of indole-based peptoids as potent noncompetitive antagonists of transient receptor potential vanilloid 1
Quintanar-Audelo M, Fernández-Carvajal A, Van Den Nest W, Carreño C, Ferrer-Montiel A and Albericio F
J Med Chem, 50 (24), 6133-6143 (2007)
Inhibition of VAP1: quickly gaining ground as an anti-inflammatory therapy
Yraola F, Albericio F and Royo M
ChemMedChem, 2 (2), 173-174 (2007)
Synthesis and structure-activity relationship of cytotoxic marine cyclodepsipeptide IB-01212 analogues
Cruz LJ, Francesch A, Cuevas C and Albericio F
ChemMedChem, 2 (7), 1076-1084 (2007)
The synthesis of naturally occurring peptides and their analogs
Cupido T, Tulla-Puche J, Spengler J and Albericio F
Curr Opin Drug Discov Devel, 10 (6), 768-783 (2007)
Synthesis of IB-01211, a cyclic peptide containing 2,4-concatenated thia- and oxazoles, via Hantzsch macrocyclization
Hernández D, Vilar G, Riego E, Cañedo LM, Cuevas C, Albericio F and Alvarez M.
Org Lett, 9 (5), 809-811 (2007)
A nonacid degradable linker for solid-phase synthesis
Colombo A, De la Figuera N, Fernàndez JC, Fernández-Forner D, Albericio F and Forns P
Org Lett, 9 (21), 4319-4322 (2007)
p-Nitromandelic acid as a highly acid-stable safety-catch linker for solid-phase synthesis of peptide and depsipeptide acids
Isidro-Llobet A, Alvarez M, Burger K, Spengler J and Albericio F
Org Lett, 9 (8), 1429-1432 (2007)
Novel proton acceptor immonium-type coupling reagents: application in solution and solid-phase peptide synthesis
Ayman El-Faham and Fernando Albericio
Org Lett, 9 (22), 4475-4477 (2007)
Amide-to-ester substitution in coiled coils: the effect of removing hydrogen bonds on protein structure
Scheike JA, Baldauf C, Spengler J, Albericio F, Pisabarro MT andsch B
Angew Chem Int Ed Engl, 46 (41), 7766-7769 (2007)
ds-Oligonucleotide-peptide conjugates featuring peptides from the leucine-zipper region of Fos as switchable receptors for the oncoprotein Jun
Portela C, Albericio F, Eritja R, Castedo L and Mascareñas JL
ChemBiochem, 8 (10), 1110-1114 (2007)
Enolase as a plasminogen binding protein in Leishmania mexicana
Vanegas G, Quiñones W, Carrasco-López C, Concepción JL and Albericio F and Avilán L
Parasitol Res, 101 (6), 1511-1516 (2007)
Peptides and metallic nanoparticles for biomedical applications
Kogan MJ, Olmedo I, Hosta L, Guerrero AR, Cruz LJ and Albericio F
Nanomed, 2 (3), 287-306 (2007)
Solid-phase synthesis of sulfamate peptidomimetics
Farrera-Sinfreu J, Albericio F and Royo M
J Comb Chem, 9 (3), 501-506 (2007)
Advances in solid-phase cycloadditions for heterocyclic synthesis
Feliu L, Vera-Luque P, Albericio F and Alvarez M
J Comb Chem, 9 (4), 521-565 (2007)
From the one-bead-one-compound concept to one-bead-one-reactor
Marani MM, Paradís-Bas M, Tulla-Puche J, Côté S, Camperi SA, Cascone O and Albericio F
J Comb Chem, 9 (3), 395-398 (2007)
Efficient regioselective monobromination of highly activated benzenes
Pla D, Albericio F and Álvarez M
Eur J Org Chem, 12, 1921-1924 (2007)
Chlorotrityl chloride (CTC) resin as a convenient reusable protecting group
García MF, Puxan NB , Cruz LJ, Bohling CJ and Albericio F
QSAR & Comb Sci, 26, 1027-1035 (2007)
Formation of dihydrouracils via cyclization of N-Substituted 3-Thioureidopropanoic acids and facile desulfurization
Carina ML, Delpiccolo, Albericio F, Schiksnis R A and Michelotti EL
, 63, 8949-8953 (2007)
Preparation of penta-azole containing cyclopeptides: challenges in macrocyclization
Hernández D, Riego E, Francesch A, Cuevas C, Albericio F and Álvarez M
Tetrahedron, 63, 9862-9870 (2007)
Beyond azathicoraline sintesis. Synthesis of analogues
Bayó-Puxan N, Fernández A, Tulla-Puche J, Riego E, Álvarez M and Albericio F
Int. J. Peptide Res. Therapeutics, 13, 205-306 (2007)
Chemical synthesis of 19F-labeled HIV-1 protease using fmoc-chemistry and ChemMatrix Resin
Frutos S, Tulla-Puche J, Albericio F and Giralt E
Int. J. Peptide Res. Therapeutics, 13, 221-227 (2007)
Partially fluorinated heterocycles from 4,4-Bis(trifluoromethyl)-hetero-1,3-dienes via C-F bond activation
Burger K, Helmreich B, Henning L, Spengler J, Albericio F and Fuchs A
Monatshefte fuer Chemie/Chemical Monthly, 138, 227-236 (2007)
Novel synthesis of bisaryl acetylenes
Soley R, Albericio F and Álvarez M
Synthesis, 1559-1565 (2007)
Identification of protein-binding peptides by direct MALDI-TOF-MS analysis of peptide beads selected from the screening of one-bead-one peptide combinatorial libraries
Marani MM, Oliveira E, Côte S, Camperi SA, Albericio F and Cascone O
Anal Biochem, 370 (2), 215-222 (2007)
Fmoc-2-mercaptobenzothiazole, for the introduction of the Fmoc moiety free of side-reactions
Isidro-Llobet A, Just-Baringo X, Ewenson A, Alvarez M and Albericio F
Biopolymers, 88, 733-737 (2007)
Simple machine-assisted protocol for solid-phase synthesis of depsipeptides
Spengler J, Koksch B and Albericio F
Biopolymers, 88 (6), 823-828 (2007)
Cell-penetrating proline-rich peptidomimetics
Farrera-Sinfreu J, Giralt E, Royo M and Albericio F
Methods Mol Biol, 386, 241-267 (2007)
Cell-penetrating cis-gamma-amino-l-proline-derived peptides
Farrera-Sinfreu J, Giralt E, Castel S, Albericio F and Royo M
J Am Chem Soc, 127 (26), 9459-9468 (2007)
Beyond azathiocoraline: synthesis of analogues
Bayo-Puxan N, Fernandez A, Tulla-Puche J, Riego E, Alvarez M and Albericio F
International Journal of Peptide Research and Therapeutics, 13, 295-306 (2007)
Total solid-phase synthesis of marine cyclodepsipeptide IB-01212
Cruz LJ, Cuevas C, Cañedo LM, Giralt E and Albericio F
J Org Chem, 71 (9), 3339-3344 (2006)
IB-01212, a new cytotoxic cyclodepsipeptide isolated from the marine fungus Clonostachys sp. ESNA-A009
Cruz LJ, Insua MM, Baz JP, Trujillo M, Rodriguez-Mias RA, Oliveira E, Giralt E, Albericio F and Cañedo LM
J Org Chem, 71 (9), 3335-3338 (2006)
A semicarbazide resin for the solid-phase synthesis of peptide ketones and aldehydes
Vázquez J and Albericio F
Tetrahedron Lett, 47, 1657-1661 (2006)
Peptide Dendrimers
Crespo L, Sanclimens G, Pons M, Giralt E, Royo M, and Albericio F
Chemical Reviews, 105 (5), 1663-1682 (2005)
A Straightforward Preparation of De Novo Globular Proteins Based on Proline Dendrimers
Sanclimens G, Crespo L, Giralt E, Albericio F and Royo M
J Org Chem, 70, 6274-6281 (2005)
Cell-penetrating cis-gamma-amino-l-proline-derived peptides
Farrera-Sinfreu J, Giralt E, Castel S, Albericio F and Royo M
J Am Chem Soc, 127 (26), 9459-9468 (2005)
A new strategy for solid-phase depsipeptide synthesis using recoverable building blocks
Albericio F, Burger K, Ruíz-Rodríguez J and Spengler J
Org. Lett., 7 (4), 597-600 (2005)
Solid-phase syntheses of furopyridine and furoquinoline systems
Cironi P, Tulla-Puche J, Barany G, Albericio F and Alvarez M
Organic Lett, 6 (9), 1405-1408 (2004)
Solid-phase synthesis of second-generation polyproline dendrimers
Sanclimens G, Crespo L, Giralt E, Royo M and Albericio F
Biopolymers, 76 (4), 283-297 (2004)
Developments in peptide and amide synthesis
Albericio F
Curr Opin Chem Biol, 8 (3), 211-221 (2004)
From production of peptides in milligram amounts for research to multi-tons quantities for drugs of the future
Bruckdorfer T, Marder O and Albericio F
Curr Pharm Biotechnol, 5 (1), 29-43 (2004)
A new class of foldamers based on cis-gamma-amino-L-proline
Farrera-Sinfreu J, Zaccaro L, Vidal D, Salvatella X, Giralt E, Pons M, Albericio F and Royo M
J Am Chem Soc, 126 (19), 6048-6057 (2004)
Solid-phase combinatorial synthesis of peptide-biphenyl hybrids as calpain inhibitors
Montero A, Albericio F, Royo M and Herradón B
Org Lett, 6 (22), 4089-4092 (2004)
Qualitative colorimetric tests for solid phase synthesis
Vázquez J, Qushair G and Albericio F
Methods Enzymol, 369, 21-35 (2003)
Synthesis and SAR of alpha-acylaminoketone ligands for control of gene expression
Tice CM, Hormann RE, Thompson CS, Friz JL, Cavanaugh CK, Michelotti EL, Garcia J, Nicolas E and Albericio F
Bioorg Med Chem Lett, 13 (3), 474-478 (2003)
Bicyclic homodetic peptide libraries: comparison of synthetic strategies for their solid-phase synthesis
Teixido M, Altamura M, Quartara L, Giolitti A, Maggi CA, Giralt E and Albericio F
J Comb Chem, 5 (6), 760-768 (2003)
Solid-phase total synthesis of the pentacyclic system lamellarins U and L
Cironi P, Manzanares I, Albericio F and Alvarez M
Organic Lett, 5 (16), 2959-2962 (2003)
Tentoxin as a scaffold for drug discovery. Total solid-phase synthesis of tentoxin and a library of analogues
Jiménez JC, Chavarría B, López-Macià A, Royo M, Giralt E and Albericio F
Organic Lett, 5 (12), 2115-2118 (2003)
Solid-phase synthesis of the cyclic lipononadepsipeptide [N-Mst(Ser1), d-Ser4, L-Thr6, L-Asp8, L-Thr9]syringotoxin
Bayó N, Jiménez JC, Rivas L, Nicolás E and Albericio F
Chemistry, 9 (5), 1096-1103 (2003)
Combinatorial chemistry for the discovery of new compounds
Fernando Albericio
Principal Investigator
Professor (Organic Chemistry Dept. - UB)
Office Tel : +34 93 403 70 88
Lab Tel : +34 93 4037087-+34 93 4037069
e-mail : fernando.albericio
irbbarcelona.org
Managing Director
Mercedes Álvarez
tel +34 93 403 70 86
mercedes.alvarez
irbbarcelona.org
Postdoctoral Fellow
Frank Sicherl
frank.sicherl
irbbarcelona.org
Jan Spengler
tel +34 93 403 71 27
jan.spengler
irbbarcelona.org
Judit Tulla
tel +34 93 403 48 69
judit.tulla
irbbarcelona.org
Svetlana Savina
tel +34 93 403 78 07
fax +34 93 403 71 26
MSc Student
Marc Martí Terrer
tel +34 93 403 70 87
marc.marti
irbbarcelona.org
PhD Student
Tommaso Cupido
tel +34 93 403 71 27
tommaso.cupido
irbbarcelona.org
Josep Farrera
tel +34 93 403 70 87
josep.farrera
irbbarcelona.org
Fayna García
tel +34 93 403 48 69
fayna.garcia
irbbarcelona.org
Yésica García
tel +34 93 403 48 69
yesica.garcia
irbbarcelona.org
Delia Hernández
tel +34 93 403 70 87
delia.hernandez
irbbarcelona.org
Letícia Hosta
tel +34 93 403 48 69
leticia.hosta
irbbarcelona.org
Albert Isidro
tel +34 93 403 71 27
albert.isidro
irbbarcelona.org
Carles Mas
tel +34 93 403 48 69
carles.mas
irbbarcelona.org
Marta Pelay
marta.pelay
irbbarcelona.org
Daniel Pla
tel +34 93 403 70 87
daniel.pla
irbbarcelona.org
Elisabet Prats
tel +34 93 403 48 69
elisabet.prats
irbbarcelona.org
Javier Ruiz
tel +34 93 403 71 27
javier.ruiz
irbbarcelona.org
Lorena Simón
tel +34 93 403 48 69
lorena.simon
irbbarcelona.org
Angela Graciela Torres
tel +34 93 403 71 20
angela.torres
irbbarcelona.org
Gemma Vilar
tel +34 93 403 70 87
gemma.vilar
irbbarcelona.org
Carles Ayats
tel +34 93 403 70 87
carles.ayats
irbbarcelona.org
Ramón Subiros Funosas
tel +34 93 403 71 27
ramon.subiros
irbbarcelona.org
Pau Ruiz Sanchís
tel +34 93 403 70 87
pau.ruiz
irbbarcelona.org
Xavier Just Baringo
tel +34 93 403 70 87
xavier.just
irbbarcelona.org
Peter Fransen
tel +34 93 403 71 27
peter.fransen
irbbarcelona.org
Project Manager
Eva Poca
tel +34 93 403 71 24
eva.poca
irbbarcelona.org
Research Assistant
Gerardo Alexis Acosta
tel +34 93 403 70 87
gerardo.acosta
irbbarcelona.org
Marta Paradís
tel +34 93 403 48 69
mparadis
pcb.ub.es
Miriam Góngora Benitez
tel +34 93 403 48 69
miriam.gongora
irbbarcelona.org
Visiting Professor
Sukhendu Dev
ken.dev
irbbarcelona.org