Molecular Modelling and Bioinformatics publications

Inntags: small self-structured epitopes for innocuous protein tagging

Georgieva MV, Yahya G, Codó L, Ortiz R, Teixidó L, Claros J, Jara R, Jara M, Iborra A, Gelpí JL, Gallego C, Orozco M and Aldea M.

Nat Methods, 12 (10), 955-8 (2015)

Assessing the suitability of the multilevel strategy for the conformational analysis of small ligands

Juárez-Jiménez J, Barril X, Orozco M, Pouplana R and Luque FJ.

J Phys Chem B, 119 (3), 1164-72 (2015)

The structural impact of DNA mismatches

Rossetti G, Dans PD, Gomez-Pinto I, Ivani I, Gonzalez C and Orozco M.

Nucleic Acids Res, 43 (8), 4309-21 (2015)

Synthesis and properties of 2'-deoxy-2',4'-difluoroarabinose-modified nucleic acids

Martínez-Montero S, Deleavey GF, Dierker-Viik A, Lindovska P, Ilina T, Portella G, Orozco M, Parniak MA, González C and Damha MJ.

J Org Chem, 80 (6), 3083-91 (2015)

Molecular dynamics study of naturally existing cavity couplings in proteins

Barbany M, Meyer T, Hospital A, Faustino I, D'Abramo M, Morata J, Orozco M and de la Cruz X.

PLoS One, 10 (3), e0119978 (2015)

Dissecting I-Dmoi Endonuclease Catalysis 'Live'

Molina R, Stella S, Redondo P, Gomez H, Marcaida MJ, Orozco M, Prieto J, and Montoya G

Nat Struct Mol Biol, 22 65-72 (2015)

SEABED: Small molEcule activity scanner weB servicE baseD

Fenollosa C, Otón M, Andrio P, Cortés J, Orozco M and Goñi JR.

Bioinformatics, 31 (5), 773-5 (2015)

Structure and dynamics of oligonucleotides in the gas phase

Arcella A, Dreyer J, Ippoliti E, Ivani I, Portella G, Gabelica V, Carloni P and Orozco M.

Angew Chem Int Edit, 54 (2), 467-71 (2015)

A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition

Carmona FJ, Davalos V, Vidal E, Gomez A, Heyn H, Hashimoto Y, Vizoso M, Martinez-Cardus A, Sayols S, Ferreira HJ, Sánchez-Mut JV, Morán S, Margelí M, Castella E, Berdasco M, Stefansson OA, Eyfjord JE, Gonzalez-Suarez E, Dopazo J, Orozco M, Gut IG and Esteller M.

Cancer Res, 74 (19), 5608-19 (2014)

Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures

Aviñó A, Portella G, Ferreira R, Gargallo R, Mazzini S, Gabelica V, Orozco M and Eritja R.

Febs J, 281 (4), 1085-99 (2014)